Running sudo vagrant_upgrade gave following error:
TASK [modifiedtanimoto : Install latest modified tanimoto distance] ************
fatal: [localhost]: FAILED! => {"changed": true, "cmd": ["/usr/bin/knime_plugin_installer.sh", "nl.esciencecenter.e3dchem.modifiedtanimoto", "https://3d-e-chem.github.io/updates"], "delta": "0:00:04.930356", "end": "2016-06-08 06:56:24.509904", "failed": true, "rc": 13, "start": "2016-06-08 06:56:19.579548", "stderr": "Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=512m; support was removed in 8.0\nThe installable unit nl.esciencecenter.e3dchem.modifiedtanimoto has not been found.\nApplication failed, log file location: /opt/knime/knime-full_3.1.2/configuration/1465368979863.log\nJava HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=512m; support was removed in 8.0\nCannot complete the install because one or more required items could not be found.\n Software being installed: ModifiedTanimoto 1.0.4 (nl.esciencecenter.e3dchem.modifiedtanimoto 1.0.4)\n Missing requirement: ModifiedTanimoto 1.0.4 (nl.esciencecenter.e3dchem.modifiedtanimoto 1.0.4) requires 'bundle org.knime.distmatrix [3.1.0,4.0.0)' but it could not be found\nApplication failed, log file location: /opt/knime/knime-full_3.1.2/configuration/1465368981484.log", "stdout": "CompilerOracle: exclude javax/swing/text/GlyphView.getBreakSpot\nInstallation failed.\nCompilerOracle: exclude javax/swing/text/GlyphView.getBreakSpot\nInstalling nl.esciencecenter.e3dchem.modifiedtanimoto 1.0.4.\nInstallation failed.", "stdout_lines": ["CompilerOracle: exclude javax/swing/text/GlyphView.getBreakSpot", "Installation failed.", "CompilerOracle: exclude javax/swing/text/GlyphView.getBreakSpot", "Installing nl.esciencecenter.e3dchem.modifiedtanimoto 1.0.4.", "Installation failed."], "warnings": []}
Running
sudo vagrant_upgrade
gave following error: