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3DGenomes / TADbit

TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
GNU General Public License v3.0
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TADbit export error #364

Open alkurowska opened 3 years ago

alkurowska commented 3 years ago

Hello,

I try to export files using tadbit export and I am getting the follwoing error: tadbit: error: invalid choice: 'export' (choose from 'map', 'parse', 'filter', 'describe', 'clean', 'normalize', 'bin', 'merge', 'segment', 'model')

any ideas why?

david-castillo commented 3 years ago

Hi,

It seems that you don't have the last version of TADbit. If you type tadbit version you should get v1.1 It could also be that the tadbit wrapper in your conda bin folder was not properly replaced when updating tadbit. Before updating tadbit remove tadbit from the bin folder. If you do which tadbit you will see the path of the main wrapper.

Regards

David