TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
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Adding support for Spacewalk files in tadbit model #393
Hi,
It would be nice to add support for the Spacewalk binary files as an output for 'tadbit model'.
I already coded the function needed using the ensembl of models as a base:
If you could add it (and the argument to get it) it would be very nice. Feel free to change variable names to fit the rest of the code.
Thanks,
Iago