Hi there. I have a problem when install binless...

devtools::install_github("3DGenomes/binless",subdir="binless") Downloading GitHub repo 3DGenomes/binless@master These packages have more recent versions available. Which would you like to update?

1: All 2: CRAN packages only 3: None 4: digest (0.6.18 -> 0.6.19) [CRAN] 5: knitr (1.22 -> 1.23 ) [CRAN]

gzip' length 140243 bytes (136 KB)

downloaded 136 KB

trying URL 'http://mirrors.ustc.edu.cn/CRAN/src/contrib/knitr_1.23.tar.gz' Content type 'application/gzip' length 880134 bytes (859 KB)

downloaded 859 KB

installing source package 'digest' ... package 'digest' successfully unpacked and MD5 sums checked libs g++ -std=gnu++11 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SpookyV2.cpp -o SpookyV2.o gcc -std=gnu99 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -fPIC -I/public1/home/stu_wangyibin/software/zlib-1.2.11/include -I/public1/home/stu_wangyibin/packages/include -c aes.c -o aes.o gcc -std=gnu99 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -fPIC -I/public1/home/stu_wangyibin/software/zlib-1.2.11/include -I/public1/home/stu_wangyibin/packages/include -c crc32.c -o crc32.o gcc -std=gnu99 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -fPIC -I/public1/home/stu_wangyibin/software/zlib-1.2.11/include -I/public1/home/stu_wangyibin/packages/include -c digest.c -o digest.o gcc -std=gnu99 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -fPIC -I/public1/home/stu_wangyibin/software/zlib-1.2.11/include -I/public1/home/stu_wangyibin/packages/include -c digest2int.c -o digest2int.o gcc -std=gnu99 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -fPIC -I/public1/home/stu_wangyibin/software/zlib-1.2.11/include -I/public1/home/stu_wangyibin/packages/include -c init.c -o init.o gcc -std=gnu99 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -fPIC -I/public1/home/stu_wangyibin/software/zlib-1.2.11/include -I/public1/home/stu_wangyibin/packages/include -c md5.c -o md5.o gcc -std=gnu99 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -fPIC -I/public1/home/stu_wangyibin/software/zlib-1.2.11/include -I/public1/home/stu_wangyibin/packages/include -c pmurhash.c -o pmurhash.o gcc -std=gnu99 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -fPIC -I/public1/home/stu_wangyibin/software/zlib-1.2.11/include -I/public1/home/stu_wangyibin/packages/include -c raes.c -o raes.o gcc -std=gnu99 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -fPIC -I/public1/home/stu_wangyibin/software/zlib-1.2.11/include -I/public1/home/stu_wangyibin/packages/include -c sha1.c -o sha1.o gcc -std=gnu99 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -fPIC -I/public1/home/stu_wangyibin/software/zlib-1.2.11/include -I/public1/home/stu_wangyibin/packages/include -c sha2.c -o sha2.o gcc -std=gnu99 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -fPIC -I/public1/home/stu_wangyibin/software/zlib-1.2.11/include -I/public1/home/stu_wangyibin/packages/include -c sha256.c -o sha256.o g++ -std=gnu++11 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spooky_serialize.cpp -o spooky_serialize.o gcc -std=gnu99 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -fPIC -I/public1/home/stu_wangyibin/software/zlib-1.2.11/include -I/public1/home/stu_wangyibin/packages/include -c xxhash.c -o xxhash.o g++ -std=gnu++11 -shared -L/public1/home/stu_wangyibin/packages/R-devel/lib64/R/lib -fPIC -L/public1/home/stu_wangyibin/software/zlib-1.2.11/lib -L/public1/home/stu_wangyibin/packages/lib -o digest.so SpookyV2.o aes.o crc32.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/public1/home/stu_wangyibin/packages/R-devel/lib64/R/lib -lR installing to /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/digest/libs R inst byte-compile and prepare package for lazy loading help * installing help indices building package indices installing vignettes testing if installed package can be loaded
DONE (digest)
installing source package 'knitr' ... package 'knitr' successfully unpacked and MD5 sums checked R demo inst byte-compile and prepare package for lazy loading help * installing help indices building package indices installing vignettes testing if installed package can be loaded
DONE (knitr)

The downloaded source packages are in '/tmp/RtmppMrezo/downloaded_packages' Updating HTML index of packages in '.Library' Making 'packages.html' ... done checking for file '/tmp/RtmppMrezo/remotes936475d47ff/3DGenomes-binless-602fv checking for file '/tmp/RtmppMrezo/remotes936475d47ff/3DGenomes-binless-602fbc6/binless/DESCRIPTION' (643ms)

preparing 'binless': v checking DESCRIPTION meta-information
cleaning src
running 'cleanup'
checking for LF line-endings in source and make files and shell scripts (650ms)
checking for empty or unneeded directories
building 'binless_0.15.0.tar.gz'
installing source package 'binless' ... ** libs g++ -std=gnu++11 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -g -O2 -c AnalyticalGAMLibrary.cpp -o AnalyticalGAMLibrary.o g++ -std=gnu++11 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -g -O2 -c FastData.cpp -o FastData.o g++ -std=gnu++11 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -g -O2 -c GFLLibraryTrapezeImpl.cpp -o GFLLibraryTrapezeImpl.o g++ -std=gnu++11 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -g -O2 -c GFLLibraryTriangleImpl.cpp -o GFLLibraryTriangleImpl.o g++ -std=gnu++11 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -g -O2 -c QuadProg++.cpp -o QuadProg++.o g++ -std=gnu++11 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -g -O2 -c QuadProgGAMLibrary.cpp -o QuadProgGAMLibrary.o g++ -std=gnu++11 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -g -O2 -c candidate_generation.cpp -o candidate_generation.o g++ -std=gnu++11 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -g -O2 -c csnorm_cpp.cpp -o csnorm_cpp.o gcc -std=gnu99 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -fPIC -I/public1/home/stu_wangyibin/software/zlib-1.2.11/include -I/public1/home/stu_wangyibin/packages/include -c cts_core.c -o cts_core.o g++ -std=gnu++11 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -g -O2 -c cts_to_mat.cpp -o cts_to_mat.o g++ -std=gnu++11 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -g -O2 -c fast_binless.cpp -o fast_binless.o g++ -std=gnu++11 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -g -O2 -c fast_dataframe.cpp -o fast_dataframe.o g++ -std=gnu++11 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -g -O2 -c gam.cpp -o gam.o gcc -std=gnu99 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -fPIC -I/public1/home/stu_wangyibin/software/zlib-1.2.11/include -I/public1/home/stu_wangyibin/packages/include -c gfl_csparse.c -o gfl_csparse.o gcc -std=gnu99 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -fPIC -I/public1/home/stu_wangyibin/software/zlib-1.2.11/include -I/public1/home/stu_wangyibin/packages/include -c gfl_graph_fl.c -o gfl_graph_fl.o gcc -std=gnu99 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -fPIC -I/public1/home/stu_wangyibin/software/zlib-1.2.11/include -I/public1/home/stu_wangyibin/packages/include -c gfl_tf.c -o gfl_tf.o gcc -std=gnu99 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -fPIC -I/public1/home/stu_wangyibin/software/zlib-1.2.11/include -I/public1/home/stu_wangyibin/packages/include -c gfl_utils.c -o gfl_utils.o g++ -std=gnu++11 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/include" -DNDEBUG -UNDEBUG -DUSE_BOOST=1 -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/Rcpp/include" -I"/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/RcppEigen/include" -I/usr/local/include -fpic -g -O2 -c graph_helpers.cpp -o graph_helpers.o In file included from /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/tti/has_member_function.hpp:15:0, from /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/graph/depth_first_search.hpp:27, from /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/graph/connected_components.hpp:15, from graph_helpers.cpp:7: /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/graph/depth_first_search.hpp: In substitution of 'template static boost::type_traits::yes_type boost::detail::has_member_function_finish_edge_detail_types<BOOST_TTI_DETAIL_TP_PMEMF, BOOST_TTI_DETAIL_TP_C>::chkt(boost::detail::has_member_function_finish_edge_detail_types<BOOST_TTI_DETAIL_TP_PMEMF, BOOST_TTI_DETAIL_TP_C>::helper<(& BOOST_TTI_DETAIL_TP_EC:: finish_edge)>) [with BOOST_TTI_DETAIL_TP_EC = boost::detail::components_recorder<int>]': /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/graph/depth_first_search.hpp:63:5: required from 'struct boost::detail::has_member_function_finish_edge_detail_types<void (boost::detail::components_recorder<int>::)(boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, Coordinate>&), boost::detail::components_recorder<int> >' /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/graph/depth_first_search.hpp:63:5: required from 'struct boost::detail::has_member_function_finish_edge_detail_ctmf_invoke<boost::detail::components_recorder<int>, void, boost::mpl::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, const boost::adjacencylist<boost::vecS, boost::vecS, boost::undirectedS, Coordinate>&, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl_::na>, boost::function_types::detail::property_tag<0l, 0l> >' /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/mpl/eval_if.hpp:38:31: required from 'struct boost::mpl::eval_if<boost::is_class<boost::detail::components_recorder<int> >, boost::detail::has_member_function_finish_edge_detail_ctmf_invoke<boost::detail::components_recorder<int>, void, boost::mpl::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, const boost::adjacencylist<boost::vecS, boost::vecS, boost::undirectedS, Coordinate>&, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl_::na>, boost::function_types::detail::propertytag<0l, 0l> >, mpl::bool_ >' /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/graph/depth_first_search.hpp:63:5: required from 'struct boost::detail::has_member_function_finish_edge_detail_call_types<boost::detail::components_recorder<int>, void, boost::mpl::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, const boost::adjacencylist<boost::vecS, boost::vecS, boost::undirectedS, Coordinate>&, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl_::na>, boost::function_types::detail::property_tag<0l, 0l> >' /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/mpl/eval_if.hpp:38:31: required from 'struct boost::mpl::evalif<boost::mpl::and<boost::is_same<void, boost::tti::detail::deftype>, boost::is_same<boost::mpl::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, const boost::adjacencylist<boost::vecS, boost::vecS, boost::undirectedS, Coordinate>&, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na>, boost::mpl::vector<mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl_::na> >, boost::is_same<boost::function_types::detail::property_tag<0l, 0l>, boost::function_types::detail::propertytag<0l, 0l> >, mpl::bool, mpl::bool_ >, boost::detail::has_member_function_finish_edge_detail_check_comp<boost::detail::components_recorder<int> >, boost::detail::has_member_function_finish_edge_detail_call_types<boost::detail::components_recorder<int>, void, boost::mpl::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, const boost::adjacencylist<boost::vecS, boost::vecS, boost::undirectedS, Coordinate>&, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl::na, mpl_::na>, boost::function_types::detail::property_tag<0l, 0l> > >' /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/graph/depth_first_search.hpp:63:5: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/graph/depth_first_search.hpp:239:57: required from 'void boost::depth_first_search(const VertexListGraph&, DFSVisitor, ColorMap, typename boost::graph_traits::vertex_descriptor) [with VertexListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, Coordinate>; DFSVisitor = boost::detail::components_recorder<int>; ColorMap = boost::shared_array_property_map<boost::default_color_type, boost::vec_adj_list_vertex_id_map<Coordinate, long unsigned int> >; typename boost::graph_traits::vertex_descriptor = long unsigned int]' /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/graph/depth_first_search.hpp:338:117: required from 'void boost::graph::detail::depth_first_search_impl::operator()(const Graph&, const ArgPack&) const [with ArgPack = boost::parameter::aux::arg_list<boost::parameter::aux::tagged_argument<boost::graph::keywords::tag::visitor, const boost::detail::components_recorder<int> >, boost::parameter::aux::empty_arg_list>; Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, Coordinate>]' /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/graph/depth_first_search.hpp:342:5: required from 'typename boost::result_of<boost::graph::detail::depth_first_search_impl(Param0, const ArgPack&)>::type boost::graph::depth_first_search_with_named_params(const Param0&, const ArgPack&) [with Param0 = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, Coordinate>; ArgPack = boost::parameter::aux::arg_list<boost::parameter::aux::tagged_argument<boost::graph::keywords::tag::visitor, const boost::detail::components_recorder<int> >, boost::parameter::aux::empty_arg_list>; typename boost::result_of<boost::graph::detail::depth_first_search_impl(Param0, const ArgPack&)>::type = void]' /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/graph/depth_first_search.hpp:345:3: required from 'typename boost::result_of<boost::graph::detail::depth_first_search_impl(Param0, const typename boost::detail::convert_bgl_params_to_boost_parameter<boost::bgl_named_params<T, Tag, Base> >::type&)>::type boost::depth_first_search(const Param0&, const boost::bgl_named_params<T, Tag, Base>&) [with Param0 = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, Coordinate>; P = boost::detail::components_recorder<int>; T = boost::graph_visitor_t; R = boost::no_property; typename boost::result_of<boost::graph::detail::depth_first_search_impl(Param0, const typename boost::detail::convert_bgl_params_to_boost_parameter<boost::bgl_named_params<T, Tag, Base> >::type&)>::type = void]' /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/graph/connected_components.hpp:96:39: required from 'typename boost::property_traits::value_type boost::connected_components(const Graph&, ComponentMap, typename boost::enable_if_c<boost::is_base_and_derived<boost::vertex_list_graph_tag, typename boost::graph_traits::traversal_category>::value, boost::graph::detail::no_parameter>::type) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, Coordinate>; ComponentMap = int; typename boost::property_traits::value_type = int; typename boost::enable_if_c<boost::is_base_and_derived<boost::vertex_list_graph_tag, typename boost::graph_traits::traversal_category>::value, boost::graph::detail::no_parameter>::type = boost::graph::detail::no_parameter]' graph_helpers.cpp:51:60: required from here /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/tti/detail/dmem_fun.hpp:59:43: error: '&boost::dfs_visitor<>::finish_edge' is not a valid template argument for type 'void (boost::detail::components_recorder<int>::)(boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, Coordinate>&)' because it is of type 'void (boost::dfs_visitor<>::*)(boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, Coordinate>&)' static ::boost::type_traits::yes_type chkt(helper<&BOOST_TTI_DETAIL_TP_EC: ^ /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/tti/detail/dmem_fun.hpp:71:3: note: in expansion of macro 'BOOST_TTI_DETAIL_TRAIT_HAS_TYPES_MEMBER_FUNCTION' BOOST_TTI_DETAIL_TRAIT_HAS_TYPES_MEMBER_FUNCTION(trait,name) \ ^ /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/tti/detail/dmem_fun.hpp:84:3: note: in expansion of macro 'BOOST_TTI_DETAIL_TRAIT_CTMF_INVOKE' BOOST_TTI_DETAIL_TRAIT_CTMF_INVOKE(trait,name) \ ^ /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/tti/detail/dmem_fun.hpp:114:3: note: in expansion of macro 'BOOST_TTI_DETAIL_TRAIT_HAS_CALL_TYPES_MEMBER_FUNCTION' BOOST_TTI_DETAIL_TRAIT_HAS_CALL_TYPES_MEMBER_FUNCTION(trait,name) \ ^ /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/tti/has_member_function.hpp:66:3: note: in expansion of macro 'BOOST_TTI_DETAIL_TRAIT_HAS_MEMBER_FUNCTION' BOOST_TTI_DETAIL_TRAIT_HAS_MEMBER_FUNCTION(trait,name) \ ^ /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/tti/has_member_function.hpp:112:3: note: in expansion of macro 'BOOST_TTI_TRAIT_HAS_MEMBER_FUNCTION' BOOST_TTI_TRAIT_HAS_MEMBER_FUNCTION \ ^ /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/graph/depth_first_search.hpp:63:5: note: in expansion of macro 'BOOST_TTI_HAS_MEMBER_FUNCTION' BOOST_TTI_HAS_MEMBER_FUNCTION(finish_edge) ^ /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/tti/detail/dmem_fun.hpp:59:43: note: standard conversions are not allowed in this context static ::boost::type_traits::yes_type chkt(helper<&BOOST_TTI_DETAIL_TP_EC: ^ /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/tti/detail/dmem_fun.hpp:71:3: note: in expansion of macro 'BOOST_TTI_DETAIL_TRAIT_HAS_TYPES_MEMBER_FUNCTION' BOOST_TTI_DETAIL_TRAIT_HAS_TYPES_MEMBER_FUNCTION(trait,name) \ ^ /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/tti/detail/dmem_fun.hpp:84:3: note: in expansion of macro 'BOOST_TTI_DETAIL_TRAIT_CTMF_INVOKE' BOOST_TTI_DETAIL_TRAIT_CTMF_INVOKE(trait,name) \ ^ /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/tti/detail/dmem_fun.hpp:114:3: note: in expansion of macro 'BOOST_TTI_DETAIL_TRAIT_HAS_CALL_TYPES_MEMBER_FUNCTION' BOOST_TTI_DETAIL_TRAIT_HAS_CALL_TYPES_MEMBER_FUNCTION(trait,name) \ ^ /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/tti/has_member_function.hpp:66:3: note: in expansion of macro 'BOOST_TTI_DETAIL_TRAIT_HAS_MEMBER_FUNCTION' BOOST_TTI_DETAIL_TRAIT_HAS_MEMBER_FUNCTION(trait,name) \ ^ /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/tti/has_member_function.hpp:112:3: note: in expansion of macro 'BOOST_TTI_TRAIT_HAS_MEMBER_FUNCTION' BOOST_TTI_TRAIT_HAS_MEMBER_FUNCTION \ ^ /public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/BH/include/boost/graph/depth_first_search.hpp:63:5: note: in expansion of macro 'BOOST_TTI_HAS_MEMBER_FUNCTION' BOOST_TTI_HAS_MEMBER_FUNCTION(finish_edge) ^ make: *** [graph_helpers.o] Error 1 ERROR: compilation failed for package 'binless'
removing '/public1/home/stu_wangyibin/packages/R-devel/lib64/R/library/binless' Error in i.p(...) : (converted from warning) installation of package '/tmp/RtmppMrezo/file9366b217c10/binless_0.15.0.tar.gz' had non-zero exit status

Any help would be greatly appreciated !

Thanks so much

3DGenomes / binless

Installation failed on CentOS6.6 with R 3.5.1 #10

trying URL 'http://mirrors.ustc.edu.cn/CRAN/src/contrib/knitr_1.23.tar.gz' Content type 'application/gzip' length 880134 bytes (859 KB)

devtools::install_github("3DGenomes/binless",subdir="binless") Downloading GitHub repo 3DGenomes/binless@master Installing 1 packages: BH trying URL 'http://mirrors.ustc.edu.cn/CRAN/src/contrib/BH_1.69.0-1.tar.gz' Content type 'application/gzip' length 12378154 bytes (11.8 MB)