Open paytocode opened 2 years ago
My data consist of b=0 and b= 1000 with 55 gradient directions. I ran my line of code for ss3t_csd_beta1 as:
ss3t_csd_beta1 preproc_unbiased.mif wm.txt wmfod.mif gm.txt gmfod.mif csf.txt csffod.mif -mask mask_ss.mif
However, I got an error like ...
shconv: [ERROR] unknown option "-mask" ss3t_csd_beta1: [ERROR] shconv fod_csf_0.mif wresp_csf_bz.txt sh_csf_bz_1.mif -mask mask.mif (ss3t_csd_beta1:163) ss3t_csd_beta1: [ERROR] Information from failed command: ss3t_csd_beta1: shconv: [ERROR] unknown option "-mask" ss3t_csd_beta1: ss3t_csd_beta1: [ERROR] For debugging, inspect contents of scratch directory: /Volumes/data/ss3t_csd_beta1-tmp-QGUFYT/
I tried the same line of code as before without -mask:
ss3t_csd_beta1 preproc_unbiased.mif wm.txt wmfod.mif gm.txt gmfod.mif csf.txt csffod.mif
and got an error like ....
Command: sh2amp sh_csf_bz_1.mif grad_bz.txt sig_csf_bz_1.mif -gradient sh2amp: [ERROR] unknown option "-gradient" ss3t_csd_beta1: [ERROR] sh2amp sh_csf_bz_1.mif grad_bz.txt sig_csf_bz_1.mif -gradient (ss3t_csd_beta1:166) ss3t_csd_beta1: [ERROR] Information from failed command: ss3t_csd_beta1: sh2amp: [ERROR] unknown option "-gradient" ss3t_csd_beta1: ss3t_csd_beta1: [ERROR] For debugging, inspect contents of scratch directory: /Volumes/data/ss3t_csd_beta1-tmp-SMBBST/
Command: sh2amp sh_csf_bz_1.mif grad_bz.txt sig_csf_bz_1.mif -gradient sh2amp: [ERROR] unknown option "-gradient"
ss3t_csd_beta1: [ERROR] sh2amp sh_csf_bz_1.mif grad_bz.txt sig_csf_bz_1.mif -gradient (ss3t_csd_beta1:166) ss3t_csd_beta1: [ERROR] Information from failed command: ss3t_csd_beta1: sh2amp: [ERROR] unknown option "-gradient" ss3t_csd_beta1: ss3t_csd_beta1: [ERROR] For debugging, inspect contents of scratch directory: /Volumes/data/ss3t_csd_beta1-tmp-SMBBST/
Hi,I also encountered this problem. Have you solved it now?
My data consist of b=0 and b= 1000 with 55 gradient directions. I ran my line of code for ss3t_csd_beta1 as:
However, I got an error like ...
I tried the same line of code as before without -mask:
and got an error like ....