What does NA represent in the original PDUI matrix？

3UTR / DaPars2

Dynamics analysis of Alternative PolyAdenylation from RNA-seq

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What does NA represent in the original PDUI matrix？ #6

Closed AIBio closed 2 years ago

AIBio commented 2 years ago

Hi, I noticed that there are a lot of 'NA' values in raw PDUI matrix generated from DaPars2. Does these ’NA‘ values mean that it is uncertain whether to use a distal polyA site for a certain gene? Could you explain the specific meaning about 'NA' values? Note: My data is scRNAseq data generated with SMART-seq2 protocol. Thanks Hanwen Yu 2021/07/18

3UTR commented 2 years ago

’NA‘ values means the read coverage of 3'UTR region is not sufficient for DaPars calculation.