biochem-fan
commented
4 years ago I guess the box size must be 96 px. @dkimanius, can you confirm?
Open heejongkim opened 4 years ago
biochem-fan
commented
4 years ago I guess the box size must be 96 px. @dkimanius, can you confirm?
Hi,
Thanks for releasing a very promising method to the public. After testing with the provided example data successfully, I attempted to run it on my data but I got the follow error msg and job got killed.
Traceback (most recent call last): File "/home/xxxx/externprior/externprior/exrecon_cwred.py", line 155, in
result_ft[imix] = (data_ft[imix] + denoised_ft[imix] / tau2[imix]) / (weights[imix] + 1. / tau2[imix])
IndexError: boolean index did not match indexed array along dimension 0; dimension is 96 but corresponding boolean dimension is 1000
in: /home/xxxx/relion/src/backprojector.cpp, line 1283
ERROR:
ERROR: there was something wrong with system call: python /home/xxxx/externprior/externprior/exrecon_cwred.py /home/xxxx/externprior/dncnn_model Refine3D/job861/run_it001_half2_class001_external_reconstruct.star
=== Backtrace ===
/opt/relion-3.1/bin/relion_refine_mpi(_ZN11RelionErrorC1ERKSsS1_l+0x41) [0x44c081]
/opt/relion-3.1/bin/relion_refine_mpi(_ZN13BackProjector19externalReconstructER13MultidimArrayIdER8FileNameS2_S2_S2_S2_bdi+0x1d34) [0x5bb904]
/opt/relion-3.1/bin/relion_refine_mpi(_ZN14MlOptimiserMpi12maximizationEv+0x1245) [0x477155]
/opt/relion-3.1/bin/relion_refine_mpi(_ZN14MlOptimiserMpi7iterateEv+0x3d8) [0x47a858]
/opt/relion-3.1/bin/relion_refine_mpi(main+0x5f) [0x43a3ef]
/lib64/libc.so.6(__libc_start_main+0xf5) [0x7f2028d0e3d5]
/opt/relion-3.1/bin/relion_refine_mpi() [0x43d84f]
Any suggestions would be very much appreciated.
Thanks.
best, heejong