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3dem / model-angelo

Automatic atomic model building program for cryo-EM maps
MIT License
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About the training data #105

Open Qmi3 opened 5 months ago

Qmi3 commented 5 months ago

Great Work! It seems that ModelAngelo organizes a training set with good quality. Do you have plans to release them? I think it's a great resources for the computational CryoEM community.

jamaliki commented 2 months ago

Hi @Qmi3 ,

Sorry for the late reply! The original dataset with all the processing already done etc is too large for us to be able to release, due to the size of the maps associated with it.

What I can offer instead is the following list of PDB ids used for training. I can also (if there is interest) provide some cleaned scripts for the PDB parsing, some constant shifts required to register cryo-EM maps with these models, and some pointers for processing the maps.

Please find the attached list of PDB ids: model_angelo_train_pdbs.txt

Best, Kiarash.