search

3dem / model-angelo

Automatic atomic model building program for cryo-EM maps
MIT License
110 stars 18 forks source link

RNA only does not run #48

Open mcianfrocco opened 1 year ago

mcianfrocco commented 1 year ago

Hello -

I was testing my model-angelo v.1.0.1 installation using this RNA only cryo-EM map:

https://www.rcsb.org/structure/6ues https://www.emdataresource.org/EMD-20755

But, with this as input, the job won't start. Instead, it displays the help message.

Mike

$ model_angelo build -v emd_20755.mrc -rf rcsb_pdb_6UES.fasta usage: model_angelo build [-h] --volume-path VOLUME_PATH --protein-fasta PROTEIN_FASTA [--rna-fasta RNA_FASTA] [--dna-fasta DNA_FASTA] [--output-dir OUTPUT_DIR] [--mask-path MASK_PATH] [--device DEVICE] [--config-path CONFIG_PATH] [--model-bundle-name MODEL_BUNDLE_NAME] [--model-bundle-path MODEL_BUNDLE_PATH] [--keep-intermediate-results] model_angelo build: error: the following arguments are required: --protein-fasta/--fasta-path/--f/--pf/-f/-pf

jamaliki commented 1 year ago

Hi @mcianfrocco,

Yes, currently that is true. It's an oversight, hopefully should be fixed soon!

Best, Kiarash.