Closed Rafael-Ayala closed 7 months ago
Hi,
Sorry for the very late response. Is this crashing on a previously working input? If that is the case, do you mind sharing the input map and sequence to my email? kjamali [at] mrc-lmb.cam.ac.uk
I think this can be solved by updating line 366 and line 365 of the hmm_sequence_align.py file from
og_chain_starts = np.array([c[0] for c in chains]) og_chain_ends = np.array([c[-1] for c in chains])
to
og_chain_starts = np.array([c[0] for c in chains], dtype=np.int32) og_chain_ends = np.array([c[-1] for c in chains], dtype=np.int32)
Just some datatype errors. At least so far works for me.
Thanks.
Thank you qitsweauca! I will push this in
Hi,
Firstly, thanks a lot for this amazing software.
I previously used version 0.2.4 with no problem. However, I have recently been trying to run 1.0.1, but have been unable to complete a successful run. It seems to always crash after completing the 1st GNN refinement round.
Here is the traceback found in the log file:
Any help would be greatly appreciated!
Thanks a lot in advance
Best wishes,
Rafa