Open Appoota opened 10 months ago
Hi,
I'm very sorry, this is due to a recent change which seems to have broken things. Could you try pulling the latest code and running python setup.py install
in your model_angelo
environment? If you need help with this, please let me know.
Best, Kiarash.
Thanks for your prompt reply @jamaliki, sorry I couldn't get back to you earlier.
It did resolve the issue immediately and we were able to generate a 3D model.
However, I have a couple of (seemingly unrelated) questions:
Thanks again!
Hi @Appoota ,
The default colouring in ChimeraX is based on chains, I believe. So it is saying that these are separate chains. Does that make sense?
As for the RNA, when resolution is not very high (higher than 3 A), RNA assignment becomes very difficult. That is why you might have fragmented outputs. There is not much to do other than trying to improve the resolution in this case.
Best, Kiarash.
Hi @jamaliki ,
Thanks for answering. Yes, that does clear my doubt. And yes, you're right about the resolution. Our final resolution was 3.02 A, which explains why the RNA is fragmented. Thank you again!
I'm trying to generate a model using a map generated in cryosparc and protein fasta file. The process runs through the Initial C-alpha prediction phase and then terminates, leaving behind an empty output directory. When the log file is inspected, it shows an error.
Here are the contents of the logfile
Any help is immensely appreciated. Let me know if any other information is to be shared.