ZengweiKOU
commented
4 months ago Problem solved. I used a wrong python. I added : "-DPYTHON_EXE_PYTH=/path/to/right/bin/python3.12" during cmake. Blush finally works
Open ZengweiKOU opened 4 months ago
ZengweiKOU
commented
4 months ago Problem solved. I used a wrong python. I added : "-DPYTHON_EXE_PYTH=/path/to/right/bin/python3.12" during cmake. Blush finally works
This is a template for reporting bugs. Please fill in as much information as you can.
Describe your problem Hi, I am getting the following error when trying to use the blush regularisation in 3D classification.
Environment:
Dataset:
Job options:
note.txtin the job directory):which relion_refine_mpi--continue Class3D/job264/run_it007_optimiser.star --o Class3D/job273/run --dont_combine_weights_via_disc --scratch_dir /scr --pool 3 --pad 2 --iter 25 --tau2_fudge 4 --particle_diameter 235 --oversampling 1 --healpix_order 2 --offset_range 5 --offset_step 2 --j 6 --gpu "0,1" --pipeline_control Class3D/job273/Error message: Run.out
Expectation iteration 1 of 25 2.47/2.47 min ............................................................~~(,,"> Maximization (with Blush regularization)... 000/??? sec ~~(,,"> [oo]
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 499754 RUNNING AT sn4622120434 = EXIT CODE: 9 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Killed (signal 9) This typically refers to a problem with your application. Please see the FAQ page for debugging suggestions
run.err Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 keyCould not load library libcudnn_cnn_infer.so.8. Error: libcuda.so: cannot open shared object file: No such file or directory /data/path/newrelion5/bin/relion_python_blush: line 36: 501058 Aborted (core dumped) TORCH_HOME="$torch_home" "$python_executable" -c "from relion_blush import main; exit(main())" "$@"
Something went wrong in the external Python call... Command: relion_python_blush Class3D/job270/run_it001_class001_external_reconstruct.star --gpu 0,1,0,1,
---------------------------------- PYTHON ERROR --------------------------------- Has RELION been provided a Python interpreter with the correct environment? The interpreter can be passed to RELION either during Cmake configuration by using the Cmake flag -DPYTHON_EXE_PATH=<path/to/python/interpreter>. NOTE: For some modules TORCH_HOME needs to be set to find pretrained models
Using python executable: /home/cryosparc_user/mambaforge/envs/relion-5.0/bin/python