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3dem / relion

Image-processing software for cryo-electron microscopy
https://relion.readthedocs.io/en/latest/
GNU General Public License v2.0
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relion_import ignores --ofile #720

Closed lkater closed 3 years ago

lkater commented 3 years ago

Hi! I possibly found a minor bug running relion_import from terminal:

relion_import ignores --ofile flag and uses default name

test command: which relion_import --do_movies --optics_group_name "oG1" --angpix 1.1 --kV 300 --Cs 2.7 --Q0 0.1 --beamtilt_x 0 --beamtilt_y 0 --i "raw/*.tif" --ofile movies_test.star --odir ./

expected behaviour: create movies_test.star experienced behaviour: creates movies.star

Environment:

biochem-fan commented 3 years ago

You are right. Thanks for reporting.

lkater commented 3 years ago

Sorry for posting here again. It worked for a while, but since I rebuilt relion today it is broken again? git pull Already up-to-date.

relion --version RELION version: 3.1.1-commit-9f3bf1 Precision: BASE=double, VECTOR-ACC=single

biochem-fan commented 3 years ago

Commit 9f3bf1 is much older than the above commit to fix it (d51f8af). Probably you are not in the ver3.1 branch, but in master.