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4dn-dcic / fourfront

Data portal for submitting and viewing genomic data
https://data.4dnucleome.org
MIT License
13 stars 2 forks source link

Bump minimist, higlass-multivec and vitessce #1784

Closed dependabot[bot] closed 1 year ago

dependabot[bot] commented 1 year ago

Bumps minimist to 1.2.8 and updates ancestor dependencies minimist, higlass-multivec and vitessce. These dependencies need to be updated together.

Updates minimist from 0.0.8 to 1.2.8

Changelog

Sourced from minimist's changelog.

v1.2.8 - 2023-02-09

Merged

Fixed

Commits

  • Merge tag 'v0.2.3' a026794
  • [eslint] fix indentation and whitespace 5368ca4
  • [eslint] fix indentation and whitespace e5f5067
  • [eslint] more cleanup 62fde7d
  • [eslint] more cleanup 36ac5d0
  • [meta] add auto-changelog 73923d2
  • [actions] add reusable workflows d80727d
  • [eslint] add eslint; rules to enable later are warnings 48bc06a
  • [eslint] fix indentation 34b0f1c
  • [readme] rename and add badges 5df0fe4
  • [Dev Deps] switch from covert to nyc a48b128
  • [Dev Deps] update covert, tape; remove unnecessary tap f0fb958
  • [meta] create FUNDING.yml; add funding in package.json 3639e0c
  • [meta] use npmignore to autogenerate an npmignore file be2e038
  • Only apps should have lockfiles 282b570
  • isConstructorOrProto adapted from PR ef9153f
  • [Dev Deps] update @ljharb/eslint-config, aud 098873c
  • [Dev Deps] update @ljharb/eslint-config, aud 3124ed3
  • [meta] add safe-publish-latest 4b927de
  • [Tests] add aud in posttest b32d9bd
  • [meta] update repo URLs f9fdfc0
  • [actions] Avoid 0.6 tests due to build failures ba92fe6
  • [Dev Deps] update tape 950eaa7
  • [Dev Deps] add missing npmignore dev dep 3226afa
  • Merge tag 'v0.2.2' 980d7ac

v1.2.7 - 2022-10-10

Commits

... (truncated)

Commits
  • 6901ee2 v1.2.8
  • a026794 Merge tag 'v0.2.3'
  • c0b2661 v0.2.3
  • 63b8fee [Fix] Fix long option followed by single dash (#17)
  • 72239e6 [Tests] Remove duplicate test (#12)
  • 34b0f1c [eslint] fix indentation
  • 3226afa [Dev Deps] add missing npmignore dev dep
  • 098873c [Dev Deps] update @ljharb/eslint-config, aud
  • 9ec4d27 [Fix] Fix long option followed by single dash
  • ba92fe6 [actions] Avoid 0.6 tests due to build failures
  • Additional commits viewable in compare view
Maintainer changes

This version was pushed to npm by ljharb, a new releaser for minimist since your current version.


Updates higlass-multivec from 0.2.4 to 0.3.1

Changelog

Sourced from higlass-multivec's changelog.

v0.3.1

  • Updated dependencies

v0.2.9

  • New method for log value-scaling

v0.2.5

  • Add a selectRows option to enable filtering and aggregating bars

v0.2.4

  • Fix a track height issue with states data
  • Pin HigGlass version to v1.9.3
  • Make use of ES modules for integrating with other builds/apps

v0.2.3

  • Add support for HiGlass v1.9

v0.2.2

  • Changed the size of the icon

v0.2.1

  • Add support for HiGlass v1.6 (related to PIXI v5)

v0.2.0

  • Performance improvements by using sprites instead of individually drawing every rectangle
  • Numerous bug fixes
Commits


Updates vitessce from 1.2.2 to 2.0.3

Changelog

Sourced from vitessce's changelog.

2.0.3 - 2023-02-01

Added

  • Re-implemented PR 1240 (coordinationScopesBy)
  • Added MuData file types.
  • Added a uid prop for VitS to fix Jupyter notebook style conflicts caused by multiple Vitessce widget instances loaded in the same JupyterLab session.
  • Added !important statements to override Jupyter Notebook (classic) style conflicts.
  • Added vite.config.js and pnpm run bundle for bundling sub-packages as proper ESM.
  • Added test for a "consumer" package of the Vitessce sub-packages in consumer/ directory, with a corresponding cypress test in sites/html/cypress/e2e/html.spec.cy.js.

Changed

  • Converted all rem units to px to fix R/Python widget CSS bugs caused by different root style conflicts.
  • Comment out _DiffViewConfigSchema in the docs to fix bug.
  • Switched to using react via esm.sh rather than es-react via unpkg for the Cypress tests in sites/html.
  • Simplify HiGlass dynamic import (possible now since no longer using Webpack) to resolve bug in Vitessce Python.
  • Upgrade Viv to 0.13.6 to support OME-NGFF v0.4
  • Use pnpm pack in all subpackages so that outdated packages from NPM are not used during the consumer package install test.

2.0.2 - 2022-12-09

Added

  • Added ./copy-dev.sh and ./copy-docs.sh instructions.
  • Added plugin registration exports to the main/all package exports, so that they are included in vitessce and @vitessce/dev package exports.

Changed

  • Don't await AnnData payloads that might be accessed in quickly repeatedly (i.e cache the promise, not the payload).
  • Fixed CSS bug in the development demo: changed overflow: hidden to overflow: scroll on the list of demos.
  • Bumped @vitejs/plugin-react version from 1.3.2 to 3.0.0-beta.0
  • Update parameters of MUI createGenerateClassName so that class names are deterministic
  • Fixed broken cell highlight crosshairs upon hover events in scatterplots/spatial/heatmap views by porting SCSS to MUI JSS.
  • Upgrade Viv to 0.13 and deck.gl to 8.8
  • Interleaved rgb images obey visibility prop
  • Added workaround in Spatial view for apparent bug in DeckGL PolygonLayer preventing passing polygon vertices via Uint32Array.

2.0.1 - 2022-11-20

Added

  • Added gating component that allows users to dynamically generate a scatterplot based on gene expression values.
    • New coordination types of gatingFeatureSelectionX and gatingFeatureSelectionY for the values selected for the gating plot.
  • Added new arcsinh option for the coordinaition type featureValueTransform
  • Added new coordination type featureValueTransformCoefficient to apply a coefficent to a feature value transform.
  • Added new demos to the documentation to showcase the new obs-by-feature features.
  • Added ViewType as a main export from src/index.js alongside Component. Replaced Component with ViewType in the documentation.

Changed

  • Added new file type and data type constants.
  • Implemented "minimal" file types and data types:

... (truncated)

Commits


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dependabot[bot] commented 1 year ago

Looks like these dependencies are updatable in another way, so this is no longer needed.