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4dn-dcic / hic2cool

Lightweight converter between hic and cool contact matrices.
MIT License
66 stars 7 forks source link

Update requirements to allow newer versions #46

Closed paulmenzel closed 4 years ago

paulmenzel commented 4 years ago

Currently, hic2cool prevents the installation of newer Python packages requiring higher versions than the ones listed in the hic2cool requirements.

Is it documented somewhere, why the versions are pinned down?

SooLee commented 4 years ago

Sorry for the confusion. The actual dependencies in setup.py were not pinned but there was discrepancy between setup.py and requirements.txt. Now setup.py takes dependencies directly from requirements.txt (requirements.txt updated to match the old setup.py).

paulmenzel commented 4 years ago

No problem, thank you for the changes in https://github.com/4dn-dcic/hic2cool/pull/47.

Is there a reason, why the numpy>=1.10.1,<=1.16.3, and scipy<=1.2.1?

SooLee commented 4 years ago

I loosened the criteria in branch dep - somehow Travis is not working today though it passed the local tests. I will merge & release later.

SooLee commented 4 years ago

0.8.2 is released with loosened version for numpy, scipy and pandas

paulmenzel commented 4 years ago

Thanks. Closed by https://github.com/4dn-dcic/hic2cool/pull/48.