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4dn-dcic / hic2cool

Lightweight converter between hic and cool contact matrices.
MIT License
63 stars 7 forks source link

No weight column in the converted .mcool file #63

Open nikhilp11 opened 1 year ago

nikhilp11 commented 1 year ago

Hello, first of all thank you for creating this package. I had one doubt, whenever I am converting the .hic file to .mcool file, the weight column is missing from the file? Is there any way I can add that weight column in the new converted file

clarabakker commented 10 months ago

Hello! Sorry, this repo has been quiet for a while, so I suspect you have an answer by now. 🙂

You should be able to use cooler balance to add weights (documentation here). If you would like to use different weights, perhaps this guidance will be helpful?