search

4dn-dcic / pairix

1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
MIT License
86 stars 14 forks source link

Converting pairs to merged_nodups #67

Closed papelypluma closed 3 years ago

papelypluma commented 3 years ago

Hi pairix developers! I'd like to explore if it's possible by any chance to convert pairs file to merged_nodups file using pairix? There's a script in pairix that does the reverse though.

Thanks a lot!

SooLee commented 3 years ago

Hi @papelypluma Sorry we currently don't have an option to convert pairs to merged_nodups. But juicer_tools does take in the pairs format so you may not have to convert it if that's how you wanted to use the merge_nodups. If you do need to convert, you could try awk to rearrange the columns?

papelypluma commented 3 years ago

Hi @SooLee, thanks much for the response and suggestion! I'll move forward with this idea.