Tibanna1.0 errors out with Snakemake

4dn-dcic / tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

MIT License

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Tibanna1.0 errors out with Snakemake #328

Closed klai5 closed 3 years ago

klai5 commented 3 years ago

Running the latest version of snakemake (v6.0.5) and tibanna (v1.1.2) will result in an error that didn't exist with 0.18.3:

"tibanna.exceptions.MissingFieldInInputJsonException: field snakemake_main_filename is required in args for language snakemake"

It seems like it doesn't use the -s [snakefile] as the snakemake_main_filename?

SooLee commented 3 years ago

@klai5 Thanks for reporting the error. Tibanna v1.2.0 should work.