Closed nate-d-olson closed 2 years ago
I looked into this issue and it appears that the default DNS server used by this version of tibanna is blocked by my institution's firewall. I was able to develop a workaround but the docker-based tibanna and modifying the /etc/resolv.conf
using the snakemake --precommand
argument. I will close this issue but can provide additional information if it will help other users or the tibanna
development team.
My step-functions regularly fail 5 minutes after the jobs start but the instances run to completion and the rule output files are successfully transferred to the S3 bucket. The only error I see in the log files is associated with dowloading
goofys-latest
.We have to define the security group and subnet as we don't have a default VPC. Could this error be due to our security group or subnet settings?