SFN Timeout - Githubissues

4dn-dcic / tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

MIT License

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SFN Timeout #373

Closed willronchetti closed 2 years ago

willronchetti commented 2 years ago

Lower run_task timeout on retry so it will try a new instance/subnet combination sooner
Adjust some logging and retry mechanisms around the DynamoDB API calls to ensure they go through, or at least more info comes from them when they do not work as expected
Small PEP8