Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
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Add `arm_per_region` as option, fix Singularity, reduce build time #380
arm_per_region is now configurable as config option. This is required to make it compatible to tibanna_ff, where we need to overwrite the used AMIs
Singularity was not working at all. This has been fixed together with a cwltool version bump. Also, it is now working on ARM instances. An ARM/AMD Singularity .deb package has been compiled for simpler installation in the Tibanna docker image. These packages are pulled from S3.
The docker build time has been reduced as all installations from source have been removed
Mounting via Goofys has been fixed for ARM instances
alexander-veit
commented
1 year ago
arm_per_regionis now configurable as config option. This is required to make it compatible totibanna_ff, where we need to overwrite the used AMIscwltoolversion bump. Also, it is now working on ARM instances. An ARM/AMD Singularity.debpackage has been compiled for simpler installation in the Tibanna docker image. These packages are pulled from S3.