Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
I am trying to run Tibanna on a conda virtual environment. When I execute:
tibanna deploy_unicorn -g tibanna_g -b bucket
I encounter the following error:
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
tibanna 5.2.0 requires tomlkit<0.12.0,>=0.11.0, but you have tomlkit 0.12.4 which is incompatible.
However, when I check the installed packages:
pip list|grep tomlkit
tomlkit 0.11.8
it seems that the pip version being used by Tibanna is incorrect. Is there a solution for this?
I use:
I am trying to run Tibanna on a conda virtual environment. When I execute:
I encounter the following error:
However, when I check the installed packages:
it seems that the pip version being used by Tibanna is incorrect. Is there a solution for this?