4dn-dcic / tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
MIT License
70 stars 28 forks source link

Fix docker version #405

Closed alexander-veit closed 5 months ago

alexander-veit commented 5 months ago

Fixes the docker version that we are installing within the awfs docker image. Newer versions will build, but workflows will fail with the following error:

## Starting docker in the AWSF container
/etc/init.d/docker: 62: ulimit: error setting limit (Invalid argument)