Retirement of G3 instances

4dn-dcic / tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

MIT License

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Retirement of G3 instances #411

Open laurentiush opened 3 hours ago

laurentiush commented 3 hours ago

It seems that AWS has retired their G3 instances. Now it seems that in some cases Tibanna selects a g3 instance because it thinks it is the cheapest option ( I am using spot instances ). Result is that the job fails because the g3 instance does not exist anymore.

Could you please update the list with available instances from which Tibanna chooses?

alexander-veit commented 2 hours ago

Thank you for reporting this. @clarabakker Could you please investigate and remove the relevant instances from the Benchmark package?