4ment / torchtree

A probabilistic framework in PyTorch for phylogenetic models
https://4ment.github.io/torchtree
GNU General Public License v3.0
13 stars 2 forks source link

CLI no date given #2

Closed mattapow closed 2 years ago

mattapow commented 2 years ago

Read in fasta file with no dates given. Assume all taxa have same dates of 0.0. Is this sensible?

Eg a fasta file with:

>Alligator_mississippiensis
CCTGGTTGATCCTGC...
>Ambystoma_mexicanum
----TGGTTGATCCTG...
...

Also improve a couple of install steps.

4ment commented 2 years ago

Your branch appears to be about a dozen commits behind master. The install steps are already fixed and the date parsing function has changed a lot.