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4ment / torchtree

A probabilistic framework in PyTorch for phylogenetic models

https://4ment.github.io/torchtree

GNU General Public License v3.0

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Closed mattapow closed 2 years ago

mattapow commented 2 years ago

Read in fasta file with no dates given. Assume all taxa have same dates of 0.0. Is this sensible?

Eg a fasta file with:

>Alligator_mississippiensis
CCTGGTTGATCCTGC...
>Ambystoma_mexicanum
----TGGTTGATCCTG...
...

Also improve a couple of install steps.

4ment commented 2 years ago

Your branch appears to be about a dozen commits behind master. The install steps are already fixed and the date parsing function has changed a lot.