I have added a flag -x for enabling experimental features in compareMS2. It takes an integer as argument. 0 (default) = no experimental features. 1 = level 1 of experimental features. This could be exposed on the 'advanced parameter' page of the GUI, and passed along to compareMS2.
I have added a flag -x for enabling experimental features in compareMS2. It takes an integer as argument. 0 (default) = no experimental features. 1 = level 1 of experimental features. This could be exposed on the 'advanced parameter' page of the GUI, and passed along to compareMS2.