595693085 / DGraphDTA

a novel DTA predition method using graph neural network
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About Pconsc4 #2

Closed qwe1997 closed 3 years ago

qwe1997 commented 3 years ago

Thanks for sharing codes and data for the article.I have tried to install all dependencies in this program but I failed to install Pconsc4 and the error is shown in the following:

ERROR: Command errored out with exit status 1: command: 'c:\anaconda3\envs\dgraphdta\python.exe' -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\11956\AppData\Local\Temp\pip-install-gxcrzxw5\pygaussdca\setup.py'"'"'; file='"'"'C:\Users\11956\AppData\Local\Temp\pip-install-gxcrzxw5\pygaussdca\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base 'C:\Users\11956\AppData\Local\Temp\pip-pip-egg-info-0tit5l98' cwd: C:\Users\11956\AppData\Local\Temp\pip-install-gxcrzxw5\pygaussdca\ Complete output (25 lines): Traceback (most recent call last): File "", line 1, in File "C:\Users\11956\AppData\Local\Temp\pip-install-gxcrzxw5\pygaussdca\setup.py", line 10, in from pythran import PythranExtension File "c:\anaconda3\envs\dgraphdta\lib\site-packages\pythran__init.py", line 39, in from pythran.toolchain import (generate_cxx, compile_cxxfile, compile_cxxcode, File "c:\anaconda3\envs\dgraphdta\lib\site-packages\pythran\toolchain.py", line 6, in from pythran.backend import Cxx, Python File "c:\anaconda3\envs\dgraphdta\lib\site-packages\pythran\backend.py", line 8, in from pythran.analyses import LocalNodeDeclarations, GlobalDeclarations, Scope File "c:\anaconda3\envs\dgraphdta\lib\site-packages\pythran\analyses__init__.py", line 12, in from .aliases import Aliases, StrictAliases File "c:\anaconda3\envs\dgraphdta\lib\site-packages\pythran\analyses\aliases.py", line 6, in from pythran.syntax import PythranSyntaxError File "c:\anaconda3\envs\dgraphdta\lib\site-packages\pythran\syntax.py", line 7, in from pythran.tables import MODULES File "c:\anaconda3\envs\dgraphdta\lib\site-packages\pythran\tables.py", line 175, in BINARY_UFUNC = {"accumulate": FunctionIntr()} File "c:\anaconda3\envs\dgraphdta\lib\site-packages\pythran\intrinsic.py", line 93, in init super(FunctionIntr, self).init(**kwargs) File "c:\anaconda3\envs\dgraphdta\lib\site-packages\pythran\intrinsic.py", line 57, in init__ [to_ast(d) for d in kwargs.get('defaults', [])]) File "c:\anaconda3\envs\dgraphdta\lib\site-packages\gast\gast.py", line 19, in create_node format(Name, nbparam, len(Fields)) AssertionError: Bad argument number for arguments: 6, expecting 7

ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.

So how to deal with this problem?What should I do for the data preparation if I want to use my own datasets?

qwe1997 commented 3 years ago

I just solved the problem,because I can not install pyGaussDCA so I failed to install Pconsc4 .Here is my environment: python 3.7 & Pythran 0.9.5 & gast 0.3 & beniget 0.2 Don't use the newest gast and beniget or you will failed to install Pconsc4

PuYuQian commented 3 years ago

Thanks for your help.