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Hi,
I am trying to run optimized_binless protocol. I successfully run preprocessing.R,
At the third iteration of normalize_binless I have a reproducible error:
### Iteration 1
Residuals
Expos…
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Hi there,
I am having trouble installing binless....
I am working on CentOS7 with R3.5.3 and tried the following command :
`devtools::install_github("3DGenomes/binless/binless")`
Everything…
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I'm trying to find out what build2 can do, and whether it could be a viable build system to use.
However, there seems to be no documentation on creating header-only libraries. The [last email](https:…
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Assume that the package `xxx` exports the qualified targets `exe{xxx}` and `lib{xxx}`. According to the manuals and the HOWTOs, there are multiple reasons to split the `xxx` package into the separate …
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Make WHAM go faster!
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Hi,
I was wondering if there is a way to include batches in the binless analyses. I have 4 conditions, of which two have 3 replicates (control & treatment) and two have only 2 replicates (control + i…
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### Describe the workflow you want to enable
As per [Brier score User Guide](https://scikit-learn.org/stable/modules/model_evaluation.html#brier-score-loss):
“Only when refinement loss remains t…
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**Current Candidate(s)**
* `bingrep` (no rename)
* `binocular`
* `bing`
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`bg` cannot be used without path prefix because of `bg` for job backgrounding in bash/posix.
so we need …
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In section 8.3, many estimators were summarized. Is it possible to also have some description on WHAM? Because WHAM was mentioned a few times in the paper (especially in the "recommendations"). Thanks…
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Hi,
I wanted to make sure that I understand the definition of the bias potential matrix correctly.
Assuming an umbrella sampling experiment with 4 windows A, B, C, D and 3 states 0, 1, 2. The restr…