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Im working on and using the Chromatin portion of the project; however, I am running into issues with the preprocessing. Can you provide any more details on how you generated the initial data? I have …
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### In which category is your new term request?
- [ ] new_definition
- [X] existing_definition
### Preferred term label
chromosome
### Synonyms
_No response_
### Synonym type
None
### Textual …
ccaio updated
2 weeks ago
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https://doi.org/10.3390/cells10092362
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Dear HiC-Pro group,
I used HiC-Pro (mm10) to generate a .mool file and visualize it using HiGlass. The chromatin contact heatmap was generated successfully, but the order of the chromatin in the he…
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Preferred Term: m6A-MTase sequencing assay
Synonyms: Fiber-seq
Definition: A DNA methylation profiling assay in which chromatin stencils are created by treating nuclei with m6A methyltransferase (MT…
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Revise GO and make gene groups for domino complexes https://pubmed.ncbi.nlm.nih.gov/32432549/
and RSF complex (PMID:18454204)
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Hi,
missing ATAC components include:
- [x] ATAC-specific QC metrics (TSS, nucleosome_signal,...) see https://www.sc-best-practices.org/chromatin_accessibility/quality_control.html#calculatin…
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Dear Professor,
I noticed that the link to "All processed data" in the "Data and materials availability" section of your study "An atlas of regulatory elements in chicken: A resource for chicken ge…
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I wonder if you tested igm on genomic regions of a few megabases with higher resolution (few kb range).
Thanks
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Hi!
Thanks for such a great tool and it's very helpful for my project. I followed the tutorial and it runs well from step1 to step5 of part1. 725 candidate regions are found. But for the part2, I w…