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It'd be useful to have methods for getting the min value (and index of that value) and max value (and index of that value) from a DistanceMatrix object, or from a vector in a DistanceMatrix object. I …
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Currently, it is not easy to rename `DistanceMatrix` or `OrdinationResults` IDs. Work around are possible, but exposing a stable `.rename(rename_dict, strict=True | False)` member method would be plea…
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### Describe the workflow you want to enable
I would like to calculate the upper triangle of a distance from `scipy.spatial.distance.pdist` instead of the redundant and memory intensive version fro…
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I'm beginning to see this problem to crop up in multiple places where its becoming difficult to keep track of which metadata variables correspond to which DistanceMatrices.
It may be a good idea to …
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both classes Form and DistanceMatrix have a member called m_markers , but they are not always equal. Is this needed?
When you fire up the routetool, add 3 'ophaalpunten met aanmeldingen', and read ou…
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Distance matrices are a little too sensitive
Here is an example
```
>>> x = np.array([[0, 1.2, 1.3], [1.2, 0.0, 2.2000000001], [1.3, 2.2, 0]])
>>> np.allclose(x, x.T)
True
>>> DistanceMatrix…
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In the calculation of recurrence matrices with fixed recurrence rate there is the issue commented in #46 (indirectly calling `distancematrix`, which is expensive):
https://github.com/JuliaDynamics/…
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Following the discussion in #784, it would be really cool to have a `DistanceMatrix` plotting method that created a networkx graph (as a matplotlib `Figure`). See [here](http://stackoverflow.com/quest…
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Hi,
I noticed that, considering the same origin and destination points, the result is not matching what I get from Google maps website:
- distance: is nearly doubled
- time: is around 3/4 less
…
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I foresee something along the lines of:
Create `pymds/antigenic.py` with:
~~~
class Table(object):
def __init___(self, table_data):
self.dm = make_distance_matrix(table_data)
~…