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Last year, we annotated tools, but we'll need to annotate them in more specific terms, e.g. `image processing`, etc.
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From UDD. @tillea made a script that pulls all the EDAM annotations from there.
Please contact the debian-med mailing list or @tillea if help needed.
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We have Data::Format associations from the Paris Biohackathon; let's use these to revise the is_format_of annotations in EDAM.
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For the bio-tools subdomain we would like to restrict available (EDAM) terms that relate to our specific domain. Ideally we would like to specify a list of classes that can be chosen (for operations, …
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low priority but easy to do
annotate elements of the schema using edam:
https://www.ebi.ac.uk/ols/ontologies/edam
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- [ ] Data & format annotations:
Either from https://test.galaxyproject.org or https://usegalaxy.eu (_..org_ released with datatypes update every 4 months; _..eu_ has a few more tools than _..org_).
…
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With @hechth @bgruening
The EDAM ontology tools view is a great concept but would be much more useful if the following were addressed:
1. Text-searchable ontologies. Currently I have to scroll th…
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We need to change ontology so that mere synonyms are listed not as separated properties, but as (I would suggest) obo:hasExactSynonym annotations of canonical relations. The obo synonym annotation pro…
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Hi, is there documentation how R package maintainers can improve the information about their packages ? I am not talking about logging in and editing the information, but rather whether
there are pr…
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In the jupyter-notebook:
[FX] Question: should we use free text queries? Free text tend to return too many results.