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### Aims/objectives.
What if we use *e.g.* Ensembl 110 (for sequence context, annotation in general such as features, gene assigment, and complementing RBP annotation) and link reported sites to Ense…
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Potentially related to: https://github.com/kaizhang/SnapATAC2/issues/360.
A few folks at the Allen Institute have now noticed the normalized bigwigs from snapatac2 don't follow our expectations of …
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Either Jbrowse, Biodalliance, something else or homegrown browser.
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Hi kcleal,
Very nice genome browser!
Do you have any plans for a gw API ? For example, IGV.js
It would be really helpful to have an api without heavy memory burdens.
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> *[Filament](https://en.wikipedia.org/wiki/Galaxy_filament)* – A large-scale structure in the universe, consisting of a network of galaxies and galaxy clusters interconnected by dark matter and gas. …
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Very strange behavior. I have four ATAC-seq samples across two experimental conditions (two each). For three of the samples, Genrich identifies ~10-30k peaks, but for the other one, it identifies 0. H…
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Hello,
Thank you for creating this great tool. I have successfully run read2tree using marker genes downloaded from OMA browser and my own data, which seems really great.
However, I found some pro…
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Sarah found a bug in the genome browser! If you change the location by dragging the browser and then switch to a different species, the species in the URL is not updated, although the location is.
…
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# Summary
Users cannot view reads. The IGV panel opens, but the tracks do not load. Inspecting the browser console reveals that an HTTP request for reference files returns with a 403 error.
The HT…
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I've been testing out JBrowseR, (thanks for developing it, it looks great for several use-cases I have), and I've been having trouble setting up a custom browser.
I copied your example from the cus…