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Implement HDF5 checkpointing instead of pickles for better interoperability.
mcw92 updated
2 months ago
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Currently ComBinE and SEVN load into T0 differently than the other codes. It would be useful to have them all stored in the same format.
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Hi, All
Recently I obtained data from Mistral (ALBA, Spain), with hdf5 format. I noticed the data structure seems not the same as you implemented. if possible to rewrite the hdf5 reader to include th…
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I presume training on HDF5 will be more efficient than any of the other formats. And at least against the line GT file pairs, filesystem performance might be much better, too.
So my question is: ho…
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At some point my local preferences got reset from
```toml
[DFTK]
DFTK_threads = 1
[HDF5]
libhdf5 = "/usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so"
libhdf5_hl = "/usr/lib/x86_64-linux-gnu/h…
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Running the following python script:
```python
from bsb import from_storage
forward_model = from_storage('mouse_cereb_dcn_io_nest.hdf5')
inverse_model = from_storage('mouse_cereb_dcn_io_nest2.hd…
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We discussed the issue of too complex csv-files, which are note human readable. Therefore we could entirely switch to a different format. We settled on HDF5!
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The default file is `self.split_data = h5py.File('/media/liujack/flair_hdf5/cent_data.hdf5', 'r')`, but it seems to have different format of the hdf5 file generated by `prepare_dataset.py` in official…
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### Describe the bug
We're running a vector search with a filter benchmark, and the recall value is 0.01 when the ground truth `neighbors` contain `-1`. The `-1` indicates non-existent values. No iss…
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I propose adding the functionality to save the charge density information in a HDF5 format, which is already mentioned in #3.
This issue should serve as the main discussion point for the implementa…