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The HDP-HMM example does not work after a clean install on Python 2.7.
```bash
python -m bnpy.Run bnpy/datasets/faithful/faithful.csv HDPHMM DiagGauss memoVB --K 8
```
gives:
```
AttributeError…
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Hi Art,
I'm trying to call methylation sites in the ecoli test data but there are no results in the output directory. I took out the --twoWay flag, since it was causing an error (& deprecated in favo…
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Dear Dr. Matthew J. Johnson,
I am very interested in your work, especially time series models. Hopefully you can find some time to help me with this issue.
This repository refers to the paper ht…
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Hello
testing installation of HDP 3.1 on Virtualbox, I got this error when I configure postgres as database
database: 'postgres' # can be set to 'embedded', '…
jp006 updated
5 years ago
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Basically I was wondering if it`s possible to repeat the routine demonstrated in examples/hsmm.py with SVI training not sampling. The other examples used the possible change point models which are not…
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According to https://github.com/pyro-ppl/pyro/issues/1093 Gibbs sampling is still not implemented in pyro. Can I try it?
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Block enumeration proceeds thus:
- Query each principal node's operator for the set of possible values (before detaching)
- Form the Cartesian product
- Evaluate the posterior at every combination
- T…
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Hello again - Your package is really helpful. Could you please provide an example or some documentation for how to specify priors on the means of emission distributions when using GaussianHMM. In my p…
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This is being run from Spark.
Actually scrolling through the code I have no idea why we are getting this, seems to have arisen since our development project included titan which has set the kyro vers…
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**Describe the problem you faced**
A clear and concise description of the problem.
1. After restarting the program, .hoodie/metadata/record_index is completely deleted
2. Due to the large amount …