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_de novo_
Do your own molecular clock? MEGA alignment; IQtree / BEAST; crude calibration?
ms609 updated
7 months ago
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Defect Description:
The Simulation page of "Fluorescence Quenching and Stern-Volmer Plot: Estimation of the Quenching Constant from Stern-Volmer Plot" experiment of this lab, the facing of the clock …
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Defect Description:
The Simulation page of "Effects of Excimer and Exciplex Formations on Fluorescence Emission" experiment of this lab, the facing of the clock is differing from the flash experiment…
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I'm getting the following error when reading in a tree:
```
Traceback (most recent call last):
File "./bin/scripts/treeRenameNodes.py", line 45, in
main(args)
File "./bin/scripts/treeR…
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Hi,
I started using treetime recently and some of my trees look like this, while the others look fine. My sample size is 25 and here is an example code that I used.
`treetime --tree VREst18_clonalfr…
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Hello there,
I'm trying to run Coalescent Bayesian Skyline analysises with Beast 2.7.2 on Fedora 36, but it bugs with one of my files:
`java.lang.NullPointerException: Cannot invoke "beast.base.evol…
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Zhang et al. 2021 (https://doi.org/10.1038/s41427-021-00320-0):
This paper has reviewed several simulations to study the interaction of nanoparticles (NPs) and membrane. This paper said there are se…
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**Context**
TREETime is a computational bottleneck in the Augur bioinformatic pipeline, especially when modeling thousands and thousands of raw genomic data.
Bottom line up, how to have Augur ab…
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## *Repository Creation Request*
Use this to get your experiment repository created or updated on GitHub under Virtual Labs organization.
1. #### Coordinating Institute: IIT Kanpur
2. #### Appr…
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The date found for lineage [B.1.1.7 in Spain](https://outbreak.info/situation-reports?pango=B.1.1.7&selected=ESP&loc=ESP) is different from the earliest sample date in Spain in [PANGO](https://cov-lin…