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Hi! Thanks for your work on Easybuild. I am trying to install mothur and am running into some issues.
## System info
`cat /etc/os-release `
> PRETTY_NAME="Ubuntu 24.04 LTS"
`eb --show-config…
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hello, i am new to this field and just starting learning mothur, i have querry that i have sequence that i have to align with only v4 region from silva database and i have **silva.bacteria.batabase.**…
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We want to get mothur for alignining sequences and perhaps other functions throughout the project. Should install into `code/mothur`. Also, we don't want to track with version control, so we should ha…
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to align with mothur
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Hi;
I am encountering trouble using the all.mothur file, which is 7240 KB. I am able to preview it and open it in notepad, but I cannot open it in R or excel. R has been taking 25+ minutes at this p…
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Hi on step04, my code is as follows:
sbatch --export input=01_trimmed_reads/2012-summer,output=04_taxonomic profiles/2012-summer step04_vsearch.sbatch
And it is working for one of them, but it i…
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https://github.com/accaldwell/mothur_krona
https://github.com/marbl/Krona/wiki/Importing%20text%20and%20XML%20data
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Hi Thomas,
Am in the process of installing the dependencies for PhylOTU - does the MOTHUR version matter - 64 bit with or without readline are available for each platform? At the moment I've gone wi…
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Hi Joey,
I have a question regarding import_mothur:
When I do the following:
x1 = import_mothur(mothlist, mothgroup, cutoff = "0.01")
x2 = import_mothur(mothlist, mothgroup, cutoff = "0.09")
the res…
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need to test whether this entry in tpv/tools.yml will work for all mothur tools including ones with specific entries. This will protect user data from large files created in error.
```
toolshed.…