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Hi!
I got a strange Error reported. It showed that a the title. However, I produced `f2-summary statistics` by the instruction Step 1, which was normal and no any error repoted, but the Step 2 runnin…
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I am running both TreeMix and OrientAGraph on a dataset that includes populations from two outgroup species. Using TreeMix, setting `-root out1,out2` works. However, using OrientAGraph, using `-root o…
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Thank you for creating this tool. I'm having some trouble getting all of my jobs to run. I'm running up to 20 migrations (overkill for what OptM determined as the optimum number of migrations) and 30 …
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Hi
Today when I was run a new data ,but it turns out like this ?
if I use original treemix， the error is gone？
I wonder know why？
file is in the attach ！
thankyou！
[pop.tmix.gz](https…
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The first paragraph of the OrientAGraph README at https://github.com/sriramlab/OrientAGraph has a "this example" link targeting URL https://github.com/sriramlab/OrientAGraph/blob/main/example/README.m…
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Apologies for asking what is a very basic question about using TreeMix and OrientAGraph but I am hoping you can give me some advice. I am analyzing a set of 80 thousand SNPS that have already been fil…
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Hi,
Thank you for your work on a such great tool.
I'm running orientagraph on my data (npop:17 nsnp:1351621), but the running time becomes very long when the number of migration edges is greate…
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Hi,
I found the program often got stuck when migration edges more than 6. The output log has never refreshed for many days after printing "Performing exhaustive search to add migration edge to base…
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dear,
I have already used the orientagraph software for my data
but one of my data is ambiguous,
my command is "orientagraph -i pop.tmix.gz -m 5 -o pop.5.5 -k 1000 -bootstrap -global"
but…
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Dear @ekmolloy
Thank you for developing this tool. After an initial reading of the paper about this tool, I have had a test. I found that the result has two more files (`migration_one.llik`, `migr…