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### Desired Behaviour
An initial implementation of Overlap correction #2115 as a stand alone script that can be run on a folder of TIF/FITS files.
Some diagnostics and plotting, so that IMAT can…
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### STORM Processing
For the STORM processing we will be using ThunderSTORM from ImageJ. The documentation for it can be found in the next links:
- [Github Repository](https://github.com/zitmen/…
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Could the sample overlap correction be added to the Metal plugin?
Several European research groups release their meta association results which include our collected samples. We would like to …
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Hi,
Thank you for the great tool. I want to use an ONT long-read to assemble the mtDNA of _Spirodela polyrhiza_. I have the following error. How can I change the option of PMAT to pass the error m…
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It seems like there is currently no support for possible correction/avoiding double counting of coverage overlap in paired-end read-pairs (samtools depth option -s) and deciding on whether to include …
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At the moment the script saves images as float, but that is not convenient in terms of space. Add the option to save in integers
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I'm trying to use ASHLAR to stitch electron microscopy (EM) tiles, but although the stitching itself looks great, I don't think it offers the illumination correction needed.
The tiles (pre-stitched) …
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Hi there,
Thanks again for all the help thus far.
Would you mind helping me understand the difference between the clustering method in README with `create_som` plus `correct_data()` versus `ko…
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For large eukaryotic genomes, the file overlap.paf may be very large. I think, VeChat can be optimized in two ways to deal with this:
1) Instead of making overlap.paf, it can make overlap.paf.gz . Th…
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We noticed that for reference lists where the space between references is very narrow, some boxes can't get "fixed". This results to this:
![2019-04-03_box_problem](https://user-images.githubusercont…