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Pairwise testing becomes a necessity when testing large permutations of data.
The requirement is to create an extension to the gherkin protocol that allows for specifying equivalence classes, inclu…
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Warmup `Sum of Two Digits` and `Maximum Pairwise Product` work as expected (`Check` button runs the tests and reports expected output).
But the following:
- `Maximum Pairwise Product -- Fixing the I…
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### 🐛 Describe the bug
In the following code, I am encountering a `HIP error` during backpropagation that is thrown when executing `bond_losses[atompair_mask].mean()`. I initially suspected (based …
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Hi,
I am interested in identifying significant eQTLs given _n_ phased SNPs and _m_ genes with allele-specific reads.
I studied the `get_target_regions` script, which doesn't have the option of s…
ghost updated
4 years ago
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Hi, I really love using ape and have been using lots of the functions for calculating distance between sequences; thank you for this.
I've noticed the nucleotide substitution models that include nucl…
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We discussed this briefly in person on Monday 14 October, but to put this in writing:
The details differ but most if not all of the ANI methods have some threshold below which they find no meaningf…
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Currently, three functions exist that do something related to pairwise comparisons:
- `get_pairwise_comparisons()` outputs a data.table with three different things:
- pairwise mean score ratios…
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I am using sourmash to compare some custom kmer sets. I've used `sourmash compare` successfully, but in scaling up, I hit memory issues. To fix this, I tried `sourmash scripts pairwise`, which is much…
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`PairwiseDataAttribute` and `CombinatorialDataAttribute` should accept a parameter that allows the test to veto certain known invalid parameter combinations. Thereby suppressing generation of test cas…
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Great work for opensourcing the benchmark!
- https://github.com/boson-ai/RPBench-Auto/blob/765254be56d10ee6717476604bc6ae93a8367fa7/run_character_eval.py#L103
- https://github.com/boson-ai/RPBench…