-
Hi, I am Jaime,
I'm currently using your pipeline to analyze trajectory inference data from Slingshot and determine differences between conditions from two lineages within the same dataset.
Firs…
-
Hi,satijalab! Should I use the batch-corrected, integrated gene values in the "integrated" assay or the non-integrated gene values in the "RNA" assay for downstream Monocle analyses?
And As you said …
-
https://mp.weixin.qq.com/s/8IdKmRnGwM5P5KeZ9lLC_Q
ixxmu updated
4 months ago
-
Hi there Cassiopeia Team!
I might be interested on using your tool for lineage tracing on a scRNA-seq dataset I am working with. However, this dataset has no CRISPR-Cas9 preprocessing of the cells …
-
### Project short name:
cellFateDynamics
### Primary Wrangler:
@ipediez
### Secondary Wrangler:
### Associated files
* Google Drive: https://drive.google.com/drive/folders/1sElWkqie-5kR6LjbOeYP…
-
This is my first editorial comment on your JOSS submission.
All DOIs seem to be missing from the references, please add all of them to the `doi` key in your BibTeX source:
```
Reference check s…
-
**Submitting author:** @kokitsuyuzaki (Koki Tsuyuzaki)
**Repository:** https://github.com/rikenbit/iTensor
**Branch with paper.md** (empty if default branch):
**Version:** v1.0.0
**Editor:** @osorens…
-
**Submitting author:** @kokitsuyuzaki (Koki Tsuyuzaki)
**Repository:** https://github.com/rikenbit/iTensor
**Branch with paper.md** (empty if default branch):
**Version:** v1.0.3
**Editor:** @osorens…
-
The data format for gene sets should also support the export of differential expression results and a user uploading their own distribution for a gene set. If there is a standard format for differenti…
-
Has anyone performed pseudotemporal ordering analysis with Monocle 3 using an object made from Seurat 3's integration function?
I'm wondering if designating only 2000 features for the integration …