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Hello,
I would like to ask whether interactions QTL mapping can be used for trans QTL analysis, because I only see --mode cis_nominal. Can I change it to --mode trans for trans interaction analysis?
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We have generated RNA-seq data for the same donors across two conditions. We have called QTLs on each condition separately. But to increase power we would like to perform a joint analysis treating th…
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Just trying to understand the QTL experiment a bit more.
The [QTL dataset](https://www.giladlab.uchicago.edu/data/jointLCL/) is unavailable.
From the paper it seems unclear whether p=600 or p=7…
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Dear Marc Jan Bonder,
I am sharing what I have noticed to see if other people had the same error.
I have noticed syntax errors in both [run_QTL_analysis.py] and the [run_interaction_QTL_analysis.…
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## Why?
We check eligibility at the beginning of an induction. For most inductions, eligibility to complete an induction won't change between starting and completing an induction, however there are s…
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See PowerPoint slides describing the problems. I had to click around through a number of different pages concerning a QTL to finally find a page that actually had a link to the paper. Since this dat…
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Dear @yu-1011 @liusihan @Fefe-W
Thanks for your the great paper!
The EAS eQTL/sQTL summary data download urls in the paper are broken. How to download EAS QTL summary data?
Thanks in adva…
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# github.com/lucas-clemente/quic-go/internal/qtls
../gowork/pkg/mod/github.com/lucas-clemente/quic-go@v0.26.0/internal/qtls/go119.go:6:13: cannot use "quic-go doesn't build on Go 1.19 yet." (untype…
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When no QTL were identified, the QTL profile plot will be generated, but the pdf cannot be opened. THis causes problems for us, because we collect automatically all pdf and combine them together (usin…
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https://github.com/gabrielgesteira/QTLpoly/blob/2578b3570bd3653521b7e1d712039296820b72f7/R/read_data2.R#L72C1-L85C5
Hi Gabriel,
I am trying to help Ivan with some qtl mapping with maps made in m…