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Show luigi UI in seqr
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Add known sex aneuploidy info to seqr. In database keep detailed info, In UI show with appropriate square or circle icon based on presence of Y chromosome. Update loading pedigree to match what we are…
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1. Add a new enum for seqr data type,
2. Then, es-index typed analysis will also include a "seqr-data-type" attribute on the meta (as well as a `sequencing-type`)
Clarifying that:
* Seqr projects…
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The seqr layer is used to sync the Seqr projects with Metamist.
During the sync, we make a call to [`update_saved_variants`](https://github.com/populationgenomics/metamist/blob/dev/db/python/layers…
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Improve seqr's usability for users with disabilities including those:
- using screen readers
- navigating via keyboard/ speech instead of mouse
- with low visibility (need to be responsive if magni…
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When encountering unknown commands, the current implementation returns specific values:
* ESC_UNKNOWN ends with:
`return 033;
`
* CX_UNKNOWN ends with:
`return CTRL('x');
`
This can result in…
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Hi, I'm using magisk now on android 7 recently it stopped working with seqr I tried multiple things, hiding props and removing apps nothing seems to work, can you maybe take a look for what it checkes…
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See dcgenomics/seqr#19
Seqr should run a lot faster than blastx. Seqr is working, but doesn't take all the command-line options that blast does yet (and some aren't applicable, like `word_size`, beca…
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Placeholder ticket with some notes:
```
Seqr-Sample-QC
Sequencing metrics
if it's exome and external
Platform Level Computation
For exome samples
coverage stats, figure out which pl…
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As part of recovering costs for external datasets, we need to store and determine some reporting mechanism for the different costs we accrue for processing and storing data (re @lgruen):
- CRAM sto…