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### Objective
Enhance the terminal's multiline input capabilities to provide an intuitive editing experience similar to IPython, potentially using `prompt_toolkit` or alternative solutions.
### Tasks…
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Once I get the data input to work, it will be time to redesign the rest of he UI to match the new data model. This issue is to collect ideas and loose thoughts about the future UI
The big outline w…
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Great app, thanks!
Why can't we push aside a sequence by just pushing the first amino-acid or nucleotide from the sequence? When sequences are long, this would be easier for local alignments. And, I …
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Dear Jiangzhao
I encountered this problem during manual management.
This is a TEAID of a modified multiple alignment of a LINE transposon. It looks OK. But when I run the cons step of TEtrimmer,…
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Hi! Tack a lot for creating this `ed` clone. I need to include this in a code processing runtime ([CEDARScript](https://github.com/CEDARScript/cedarscript-integration-aider)), but I could not get it t…
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Why it can't be more like e.g. in Famitracker, which also uses single track pattern, freeform style (perhaps better fit yet would be Jeskola Buzz's sequence editor)? What I'm getting at is that inputt…
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When editing a sequence, provide a view that shows all commands in the dictionary specified in the sequence's parcel. For each command definition show argument names, types, ranges, and any other valu…
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The sequence diagram in the DG is supposed to detail the use of the `/edit` command, but the sequence diagram actually shows `execute("/delete 240001")`
![image.png](https://raw.githubusercontent.co…
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When clicking on the "(+) Create primer" from the PCR source, I would like to start editing the primer right away. In other words, we should programatically click the `ADD PRIMER` button in the "PRIME…
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- [ ] Incorrect Self_Invocation: I chose one example, but this is seen more throughout the diagram.
![image.png](https://raw.githubusercontent.com/john-nng/pe/main/files/d2db43c5-549b-419f-9afd…