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The Smith-Waterman algorithm is essentially a paiwise sequence alignment algorithm typically used in bioinformatics to optimally align two (e.g. DNA) sequences.
The Smith-Waterman algorithm can be s…
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The [Smith Waterman algorithm](https://en.wikipedia.org/wiki/Smith%E2%80%93Waterman_algorithm) is a commonly used metric to compare strings. It would be useful to add it to RapidFuzz.
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The current implementation of the analysis tool using Needleman-Wunsch algorithm is highlighting the contour between two chants. These mismatches and gaps are made of two notes, and in order to highli…
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1. Needleman-Wunsch Algorithm
2. Smith-Waterman Algorithm
These algorithms were originally developed for DNA sequencing but I read on SO, that they are at times used as string similarity metrics as …
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Might suggest the use of conda package `[vsearch](https://github.com/torognes/vsearch/)` to merge reads into 'contigs' i.e. inserts.
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Shuji,
Thank you for contributing such valuable code!
After reading your code and the original paper "End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman", I have …
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Hi
I’m conducting research regarding OCR corpuses, and I would like to use this project for evaluation of how differences on the training corpus effects the quality of the post-processing.
But, I ha…
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Dear professor ,
I am a new guy for bioinformatics algorithm , My major is biology . I wann learn bioinformatics, especially about algorithm , So can you give me some suggestions ?
Thank you v…
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There are other algorithms that are available in TextDistance that may be considered.
### Edit based
- MLIPNS http://www.sial.iias.spb.su/files/386-386-1-PB.pdf
- Strcmp95 http://cpansearch.perl.…
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> - From the ECHOES Project report 2023
> - Continuation of #20
# Pitch similarity
- to search for specific pitch patterns across the corpus and to gauge the melodic similarity between chants, or…