-
Hi Thank you for developing this useful tool!
I would like to inquire about the differences between transcript_tpm.tsv and transcript_model_tpm.tsv.
The file transcript_model_tpm.tsv contains the …
-
A large number of fusion variants that previously had entries in the VariantSummaries.tsv file have now been removed as of October. All of the removed variants appear to be gene fusions. These variant…
-
I use this repo to generate flashcards for Danish study. My flashcard program (Anki) consumes CSV/TSV files. In the past, I hacked together a script to parse the dictionary file, but that required som…
-
When a contributors.tsv file is added to a Collection or EPICollection edit screen validate the file using the `POST ingest-api/metadata/validate` endpoint. If validation fails show errors to the use…
-
Supporting the legacy input format with tsvs and fastas makes the code in the preprocessing a lot more complicated than it needs to be. We also have some complicated null logic because tsv does not ha…
-
#### Which new datasets are being added with this release?
#### What is the sample breakdown (number of WGS, WXS, RNA-Seq, Panel, Methylation, other)?
https://d3b.atlassian.net/browse/BIXU-3767
…
-
Hello :)
The code ran successfully (thank you for that), and now I'm trying to understand each column in the output table.
The ones that are mentioned in the paper are clear (such as off-target …
-
Hi, Laurie
thanks for your great efforts on such a remarkable software on compative genomics. Recently I found that in some HOGs of N0, only 1 gene was found, which makes it not proper to call i…
-
Hi, I want to use OrthoFinder to study orthology relationships for all genes in multiple species.
I don't clearly understand the one-to-one relationships. I think the number in OrthologuesStats_one-…
-
Hi,
I am using DIA-NN 1.9.1, so I tried to general a generic tsv (attached). With directlfq 0.2.20 GUI with no setting change, I got the errors below.
[directlfq_in.zip](https://github.com/user-…