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Hi, just looking for some advice -
I am looking at processing tumor-only PDX samples from targeted sequencing. I noticed this workflow on Cavatica and you mention using the Xenome tool for filteri…
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Hi there,
I'm testing `xenome classify` on an aws instance (latest Ubuntu) and it hangs after about 50 minutes. The command I used for launching the process is
```
xenome classify -T 8 -M 28 -P /da…
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I am trying to generate new xenome indices with the latest human and mouse assembly files. I am running on a 240 GB machine using 24 cores. However, the software seems to hang when writing out the edg…
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I installed this plug-in in Domoticz according to the instructions (including installing Python 3.8) on Raspberry 4.
Connection to Tuya works and all JSON files are created using the tinytuya command…
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Switches seems to randomly get on/off
Can not reproduce it exactly
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Hello,
I am using xenome classify to process xenograft RNA-seq data. The output species specific .fastq files are missing '@' or '>' and the STAR aligner is unable to map.
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Hi,
I have previously used Xenome to classify mouse reads from human reads from bulk PE RNA-seq data and the tool has worked very well. Now I would like to apply the same technique for scRNA-seq da…
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hi,
Can "xenome classify" output the fastq.gz file directly?
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Hi Jasonacox,
I have made a project to control Tuya in Domoticz with your great plugin at the moment only using cloud but in the future local control. Maybe you like it to mention it on your readme…
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Hi
I run xenome on Ubuntu 18.04 with this command:
xenome classify -P idx -T 4 -M 16 -i /mnt/4d851bf6-7749-4470-b5b5-72c293f2b3f2/IDH1/Samples/0_fastq/2_S2_Complete_L001_R1_001.fastq.gz -v --preserv…