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Currently we are running queries to get possible labels for MetaData columns when choosing them from a filter. However for very large image sets, this causes CPA to freeze when creating a new filter b…
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Maybe we can create Ubuntu 18.04 instructions in the wiki?
I followed the instructions in the wiki, but then when I started cellprofiler I got:
```bash
Traceback (most recent call last):
Fil…
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- OS: Windows Server 2019
- CellProfiler Version 2.2.0
- Downloaded from the website
Our client who uses CellProfiler on their terminal server has recently reported it crashing when launchi…
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Using CP 2.1.1, load the example database and properties file. Go to Tools > Normalization Tool. Click Image_OrigThreshold_DNA and click Perform Normalization. The error below results.
It is possib…
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**Describe the bug**
I am attempting to generate z-projected images from large `nd2` files (>80GB). When I try running in headless mode, the CellProfiler pipeline stops at the "Metadata" section an…
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Issue was raised on forum thread https://forum.image.sc/t/bfconvert-invalid-xml-character-unicode-0xffff-for-nd2-file/40453/3 and sample files have been provided in QA-29424
The issue was reproduce…
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[User reports](https://forum.image.sc/t/cellprofiler-classify-objects-with-model-from-cp-analyst/82464) issue with ClassifyObjects with a model from CellProfiler Analyst 3.0.4 with CP 4.2.4 from sourc…
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Several of the IDR studies are now also available on S3 see https://idr.github.io/ome-ngff-samples/. Note that some from the BioImageArchive are also available at https://uk1s3.embassy.ebi.ac.uk/bia-z…
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Well, not that text exactly, but we should advertise better that CP can run on a cluster/headless.
The genesis for this was a grant discussion in which we thought the reviewers might not have underst…
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Here's an example https://github.com/broadinstitute/2016_08_01_RadialMitochondriaDistribution_donna/blob/7231af7d7aa171322870512b12775a0fcac3ab32/analysis2/utils/funcs.py#L163