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I am working to enable S3 connectivity in a fork of a tool which includes htslib as a dependency. This tool currently configuring and compiles htslib without plugins and statically links to libhts.a. …
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#### version
```
samtools 1.16.1
Using htslib 1.16
Copyright (C) 2022 Genome Research Ltd.
Samtools compilation details:
Features: build=configure curses=yes
CC: c…
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**Describe the bug**
As of March 2021, jcenter went readonly. See https://developer.android.com/studio/build/jcenter-migration or https://jfrog.com/blog/into-the-sunset-bintray-jcenter-gocenter-and-c…
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**Is your feature request related to a problem? Please describe.**
No.
**Describe the solution you'd like**
The current version of `README.md` does not provide up-to-date information on the `cryp…
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Getting this error when running zUMIs 2.9.7c on a 1,000,000 read test dataset.
```
[1] "2022-08-30 11:08:40 EDT"
[1] "Coordinate sorting intermediate bam file..."
[bam_sort_core] merging from 0 …
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This issue arises for both the latest release (1.16) and today's pull from the development branch.
**Situation:** Both a `vcf.gz` and its `vcf.gz.tbi` index file are stored in an S3 bucket. Code be…
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hello,
I download some .cram files from ENA (https://www.ebi.ac.uk/ena/browser/view/PRJEB42969?show=reads), and the human ref genome file(ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/technical/refe…
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#### Are you using the latest version of [samtools](https://github.com/samtools/samtools/releases/latest) and [HTSlib](https://github.com/samtools/htslib/releases/latest)? If not, please specify.
```…
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Test the docker://nciccbr/ccbr_metro_v1.4:latest. This does not include netmhcpan as it is copyrighted independently.
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Hi! I am trying to decrypt some files and I have a secret key for that that I've set as passphrase:
`export C4GH_PASSPHRASE= decryption key they sent me via email`
I am trying to generate a secr…