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I found an issue with the EC numbers on the protein pages and I have some suggestions for changes to how the EC numbers are displayed on the front end that we could discuss during the general meeting:…
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Hi,
Thank you for this very useful package. As many of the CCLE lines have now been screened in Achilles experiments, I'm wondering whether any thought has been given to harmonizing and serving th…
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In https://github.com/biothings/BioThings_Explorer_TRAPI/issues/370, we analyzed the list of 46 APIs currently listed in the `config.js` file, summarized below. One of the things that jumped out at…
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It would be of interest (e.g. to share a given query with a collaborator) to have a URL pointing to each query at http://biosoda.expasy.org/build_biosodafrontend/
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Background: CHEBI has terms for different protonated forms of acids and bases, but does not have grouping classes that conflate over protonation state. Many groups like GO and RHEA use terms in the ph…
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* **GO term ID and label for which you request a new superclass**
disaccharides are glycosides, so should
disaccharide catabolic process (GO:0046352)
be a descendant of
GO:0016139 | glycoside …
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Dear all,
The proposal has been made to obsolete GO:0008785 alkyl hydroperoxide reductase activity and GO:0009389 dimethyl sulfoxide reductase activity
See ~#28261~
https://github.com/geneo…
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MetaCyc says that the 6 terms below are specific instances of EC:2.8.2.38 = GO:0120527
=> Merge these 6 GO terms into GO:0120527
id: GO:0120527
name: aliphatic desulfoglucosinolate sulfotransfera…
sjm41 updated
1 month ago
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
2.7.15 | packaged by conda-forge | (default, Jul 27 2018, 10:23:44)
[GCC 4.2.1 Comp…
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Please provide as much information as you can:
* **GO term ID and Label**
*
* negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway (GO:2001268)
…