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Can the proposed [/search/variantmatrix](https://app.swaggerhub.com/apis-docs/PlantBreedingAPI/BrAPI-New-Concept-Preview/0.0.0-proposal#/Genotype-Matrix-Redesign/post_search_variantmatrix) endpoint ha…
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We currently have the docker (1.4.1) running htsget-refsever. We are unable to get it to return results.
We have added in a config file:
`docker container run -d -p 3000:3000 -v /red/project/src…
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The current implementation of the `API` responses lacks adequate support for comprehensive pagination. The API solely offers a `next_page_token` as a cursor to navigate to the next page. However, to a…
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This issue is meant to capture idea and feedback on a proposal from @raskoleinonen in https://github.com/ga4gh/reverse-lookup-spec/issues/1#issuecomment-927645057
At the moment the text describing …
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@jrambla commented on [Tue Feb 07 2017](https://github.com/ga4gh-beacon/specification/issues/75)
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@david4096 commented on [Tue Feb 07 2017](https://github.com/ga4gh-beacon/specification/issues/…
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On 2022-09-21 we debated how to actually form the identifiers. Like, is there a ``, and/or a ``, and are these modifiers used just for returning identifiers, or are they actually digested, since our p…
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There are multiple TODO items in the `ga4gh/datamodel/reads.py` file, particularly where we translate from pysam objects into the GA4GH equivalents (see the `convertReadAlignment` method). None of the…
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Variant annotation supports searching by referenceName and referenceId. Currently, only search by referenceName is supported.
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We currently do not support returning unmapped reads, as this is hard to do with pysam. However, there is no test coverage to ensure that we are reporting this correctly. See the [schemas](https://git…
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As seen in proposed usage patterns in the upcoming G2P endpoints (https://github.com/ohsu-computational-biology/schemas/blob/apichanges/doc/source/api/proposed_schema_changes.md) as well as the pendin…